Showing : statistical power • reset
4
votes
5
replies
2.5k
views
sample size determination in microarrays studies with limma analysis
limma sample size microarrays statistical power
6.7 years ago eleonoregravier ▴ 70
2
votes
4
replies
1.4k
views
design microarrays limma
limma statistical power design variability microarray
updated 7.2 years ago by ★ 28k • written 7.2 years ago by • 0
3
votes
3
replies
1.8k
views
csaw: how does unequal sample size affect filtering filterWindows step
csaw differential binding analysis sample size independent filtering statistical power
updated 7.3 years ago by ★ 28k • written 7.3 years ago by • 0
2
votes
3
replies
17k
views
Removing genes with very low counts in all samples before run DESeq
deseq2 statistical power independent filtering
10.1 years ago alejandro.colaneri ▴ 20
4 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
Awards • All
Popular Question to bpshtiwan ▴ 10
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Locations • All
WEHI, Melbourne, Australia, 46 minutes ago
Peru, 54 minutes ago
EMBL Heidelberg, 1 hour ago
UPF, Barcelona, Spain, 2 hours ago
United States, 3 hours ago
Traffic: 429 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6